PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn255701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 227aa    MW: 24893.6 Da    PI: 5.8462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn255701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091254444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT e d+ + +a +    +   +W+++a++++ g+t +++k+++
       Achn255701 12 WTREQDKAFENALAIISEDssdQWEKVAAMVP-GKTVEEIKHHY 54
                     ********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.679458IPR017877Myb-like domain
SMARTSM007171.9E-7860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-4955IPR009057Homeodomain-like
SuperFamilySSF466897.48E-111065IPR009057Homeodomain-like
CDDcd001671.64E-71254No hitNo description
PfamPF002493.0E-71254IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-5113143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSINRTFNSS FWTREQDKAF ENALAIISED SSDQWEKVAA MVPGKTVEEI KHHYVILVED  60
IDAIESGCVP LPCYKDSASH DSDAGFGREG RRFEQMHSDS CSGGKSSRSD QERRRGIAWT  120
EEEHRTPTQV ASHAQKYFIR LSSATKERRR SSIHDITSVG EGDASTPQEP ITGQIVGAAS  180
RGSFGGIGNP MPTSASNISG FVPPTIVQSI DMPLMTYLRP HSSDQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1812801179RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306366.21e-79myb family transcription factor family protein
SwissprotQ8S9H72e-42DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9H5N11e-79B9H5N1_POPTR; Myb family transcription factor family protein
STRINGGLYMA07G28310.15e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-60MYB family protein